MirGeneDB 2.1
MirGeneDB ID

Cte-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-317
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Bge-Mir-317  Cgi-Mir-317-P1  Cgi-Mir-317-P2  Csc-Mir-317-P17  Csc-Mir-317-P18  Dan-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Hme-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Npo-Mir-317  Obi-Mir-317  Ovu-Mir-317  Tca-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_114: 444019-444076 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)		 Mir-34 CAPTEscaffold_114: 443343-443404 [-] Ensembl
Mir-277-P2 CAPTEscaffold_114: 443745-443810 [-] Ensembl
Mir-277-P1 CAPTEscaffold_114: 443887-443966 [-] Ensembl
Mir-317 CAPTEscaffold_114: 444019-444076 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCGGAAGGAGAAGCGUCGAGCGCAGGCAAGAGAUCACUGCGGUGCUCACAUGUAGCCACUGUGAACACAGCUGGUGGUAUCUCUUUUCUUCGCUCUGACCUGCAACAUGUUCCGAU
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Structure
        10          20        30          40         50       
ACUCGGAAGGAGAAGCGUC--     C   C       --    -| G   C     UGUA 
                     GAGCG AGG AAGAGAU  CACU GC GUG UCACA    \
                     CUCGC UCU UUCUCUA  GUGG CG CAC AGUGU    G
UAGCCUUGUACAACGUCCAGU     U   U       UG    U^ A   A     CACC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Cte-Mir-317_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGAUCACUGCGGUGCUCACA -22
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Mature sequence

Cte-Mir-317_3p
mirBase accessionMIMAT0009542
Sequence 
33- UGAACACAGCUGGUGGUAUCUCUUU -58
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