MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-317
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Bge-Mir-317  Cgi-Mir-317-P1  Cgi-Mir-317-P2  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dsi-Mir-317  Dya-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Hme-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Npo-Mir-317  Obi-Mir-317  Ovu-Mir-317  Tca-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_4: 1243961-1244027 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)		 Mir-34 DAPPUscaffold_4: 1242049-1242114 [-] Ensembl
Mir-317 DAPPUscaffold_4: 1243961-1244027 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUGGAAGAGAAAAUUUCCACACCGGGACGGGGAACCACCCUGCGUUCGCCUGUUGUUGGAAUUUUCCAGGUGAACACAGCUGGUGGUAUCUCAGUCCUUGUGAUAUUGGAACCAAUCGACAUGUU
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Structure
        10        20          30         40          50        60 
AUGUGGAAGAGAAAAUUUCCA--   C     G    -      --|  C       UGUUGUUG 
                       CAC GGGAC GGGA ACCACC  CUG GUUCGCC        G
                       GUG UCCUG CUCU UGGUGG  GAC CAAGUGG        A
UUGUACAGCUAACCAAGGUUAUA   U     A    A      UC^  A       ACCUUUUA 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Dpu-Mir-317_5p*
mirBase accessionNone
Sequence 
0- GGGGAACCACCCUGCGUUCGCC -22
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Mature sequence

Dpu-Mir-317_3p
mirBase accessionMIMAT0012661
Sequence 
42- UGAACACAGCUGGUGGUAUCUCAGU -67
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