MirGeneDB 2.1
MirGeneDB ID

Dmo-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-317
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Bge-Mir-317  Cgi-Mir-317-P1  Cgi-Mir-317-P2  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dma-Mir-317  Dme-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Hme-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Npo-Mir-317  Obi-Mir-317  Ovu-Mir-317  Tca-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Dmoj_caf1)		 scaffold_6540: 11898873-11898936 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)		 Mir-34 scaffold_6540: 11883380-11883444 [-] Ensembl
Mir-277 scaffold_6540: 11885111-11885174 [-] Ensembl
Mir-317 scaffold_6540: 11898873-11898936 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUAAGCUUUCUCUCUGUGCAAUUGCCGCUGGGAUACACCCUGUGCUCGCUUUGAGUUUAUGUUGCAAGUGAACACAGCUGGUGGUAUCCAGAGGCCGUUGACAGCCAAUGCAACAACAGCAA
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Structure
        10           20        30        40          50        60
GAGUAAGCUUUCUCUCU---  G    U   G     AUA    --|    C     UUGAGUU 
                    GU CAAU GCC CUGGG   CACC  CUGUG UCGCU       U
                    CA GUUG CGG GACCU   GUGG  GACAC AGUGA       A
AACGACAACAACGUAACCGA  -    C   A     AUG    UC^    A     ACGUUGU 
  120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Em Fe Ma Ma
Star sequence

Dmo-Mir-317_5p*
mirBase accessionNone
Sequence 
0- UGGGAUACACCCUGUGCUCGCU -22
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Mature sequence

Dmo-Mir-317_3p
mirBase accessionMIMAT0008671
Sequence 
40- UGAACACAGCUGGUGGUAUCCAGA -64
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