MirGeneDB 2.1
MirGeneDB ID

Cte-Mir-277-P2

Family name MIR-277 (all species)
Seed AAAUGCA
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-277b
Paralogues Cte-Mir-277-P1 
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cel-Mir-277  Cgi-Mir-277  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lgi-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Tca-Mir-277 
Node of Origin (locus) C. teleta
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_114: 443745-443810 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P2)		 Mir-34 CAPTEscaffold_114: 443343-443404 [-] Ensembl
Mir-277-P2 CAPTEscaffold_114: 443745-443810 [-] Ensembl
Mir-277-P1 CAPTEscaffold_114: 443887-443966 [-] Ensembl
Mir-317 CAPTEscaffold_114: 444019-444076 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCGUUAUGAUUCCGCUGAUCACUGGGUCAGUGGCAGGGUGUGACAUUUGCAAUGCGUUAUGAUUAUCAUCUGUAAAUGCAUAUUCUGGCACUAAUCUGGUCGACCUCUCACUACCUCUGCUUCG
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Structure
        10        20          30        40        50        60   
GUGCGUUAUGAUUCCGCUGA-  -| UG   C    G         A        AUGCGUUAU 
                     UC AC  GGU AGUG CAGGGUGUG CAUUUGCA         \
                     AG UG  CUA UCAC GUCUUAUAC GUAAAUGU         G
GCUUCGUCUCCAUCACUCUCC  C^ GU   A    G         -        CUACUAUUA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cte-Mir-277-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGCAGGGUGUGACAUUUGCA -23
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Mature sequence

Cte-Mir-277-P2_3p
mirBase accessionMIMAT0013575
Sequence 
44- UAAAUGCAUAUUCUGGCACUAA -66
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