MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-277

Family name MIR-277 (all species)
Seed AAAUGCA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-277
Paralogues
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Cel-Mir-277  Cgi-Mir-277  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Sme-Mir-277-P6a  Sme-Mir-277-P6b  Sme-Mir-277-P7a  Sme-Mir-277-P7b 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG7: 14498469-14498537 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-277)		 Mir-317 LG7: 14490230-14490291 [+] Ensembl
Mir-277 LG7: 14498469-14498537 [+] Ensembl
Mir-34 LG7: 14503147-14503205 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUCCGGACUUCCGGAACGUGGUGGGCUCCGUGCCAGAUGCGCGUUUACACUGCACCGUUCUAAAGAAUUCUGUAAAUGCACUAUCUGGUACGACAGCCCACUACGUGCACUCGUCUCUUUUAAUUU
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Structure
        10          20        30         40         50        60   
CAUCUCCGGACUUCCGGA--            C-           C-|        CUGCACCGUU 
                    ACGUGGUGGGCU  CGUGCCAGAUG  GCGUUUACA          \
                    UGCAUCACCCGA  GCAUGGUCUAU  CGUAAAUGU          C
UUUAAUUUUCUCUGCUCACG            CA           CA^        CUUAAGAAAU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-277_5p*
mirBase accessionMIMAT0019124
Sequence 
0- CCGUGCCAGAUGCGCGUUUACA -22
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Mature sequence

Tca-Mir-277_3p
mirBase accessionMIMAT0008382
Sequence 
45- UAAAUGCACUAUCUGGUACGACAG -69
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