| MirGeneDB ID | Efe-Mir-1994 |
|---|---|
| Family name | MIR-1994 (all species) |
| Seed | GAGACAG |
| Species | Common brandling worm (Eisenia fetida) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cgi-Mir-1994-P1 Cgi-Mir-1994-P2 Cte-Mir-1994 Esc-Mir-1994-P1 Esc-Mir-1994-P2 Lan-Mir-1994-P3a Lan-Mir-1994-P3b Lan-Mir-1994-P4a Lan-Mir-1994-P4b Lgi-Mir-1994-P1 Lgi-Mir-1994-P2 Npo-Mir-1994-P1 Npo-Mir-1994-P2 Obi-Mir-1994-P1 Obi-Mir-1994-P2 Ovu-Mir-1994-P1 Ovu-Mir-1994-P2 |
| Node of Origin (locus) | Lophotrochozoa |
| Node of Origin (family) | Lophotrochozoa |
| Genome context (Efe_combined) |
Efet.01.1510066: 31-166 [-] |
| Precursor (pre-Mir +30nt flank) | AAGGAGGACCCACUUGCUUCGCCCGUGUGCGUGCAUGCUCAACAGGCGUCUACCUAGUGUCCUACGCUAGGUAUGCGACUGAUUGAUGCAUGACAUGCACCAAUGCAUCACCGGUGAGACAGUGCGUCCUCCCUCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AA-- C U CU C --------- - - -| G C UC GGAGGAC CAC UG UCGCC GU GUGCGUG CAUGC UCAA CAG CGU UACCUAGUG \ CCUCCUG GUG AC AGUGG CA CACGUAC GUACG AGUU GUC GCG AUGGAUCGC C GCUC C - AG C CUACGUAAC A U A^ A U AU 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Efe-Mir-1994_5p* |
| mirBase accession | None |
| Sequence |
0- AAGGAGGACCCACUUGCUUCGCC -23
Get sequence
|
| Mature sequence | Efe-Mir-1994_3p |
| mirBase accession | None |
| Sequence |
114- UGAGACAGUGCGUCCUCCCUCG -136
Get sequence
|
