| MirGeneDB ID | Ovu-Mir-1994-P2 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Mir-1994-P1
|
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| Orthologues |
Cgi-Mir-1994-P2
Cte-Mir-1994
Efe-Mir-1994
Esc-Mir-1994-P2
Lgi-Mir-1994-P2
Npo-Mir-1994-P2
Obi-Mir-1994-P2
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| Node of Origin (locus) |
Mollusca
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01025550.1: 111143-111201 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUUUUGAAAUAGAAAAUGGCUAACUUCUUAGGAAGAACAAACUGAUCCCACAUUAAUGAUGCUCUGUGAGACAGUGUGUCCUCCCUCAGGGGUACAUCUACAACAGCCACUCCGUCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUUUUGAAAUAGAAAAUGGCUA--| U A A A A C UUAAU
ACUUCU AGG AG ACA ACUG UC CACA G
UGGGGA UCC UC UGU UGAC AG GUGU A
ACCUGCCUCACCGACAACAUCUACA^ C C C G - A CUCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Mir-1994-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGAAGAACAAACUGAUCCCACA -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Mir-1994-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGAGACAGUGUGUCCUCCCUCA -59
Get sequence
|
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