| MirGeneDB ID | Ovu-Mir-1994-P1 |
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| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
Ovu-Mir-1994-P2
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| Orthologues |
Cgi-Mir-1994-P1
Cte-Mir-1994
Efe-Mir-1994
Esc-Mir-1994-P1
Lgi-Mir-1994-P1
Npo-Mir-1994-P1
Obi-Mir-1994-P1
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| Node of Origin (locus) |
Mollusca
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01025550.1: 105972-106034 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAAAUAAUUCGACAAUGACCAUAUGCUAAGAGUGGACACUCUGUUCUACAUGUUGAAAAGUACUGACCAUGAGACAGUGUGUCCUCCCUUGGCAGGGGUCAAAUUGCUGCUGCCCAAAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAAAAUAAUUCGACAA---| AUA AGU U U A UUGAAAA
UGACC UGCUAAG GGACAC CUGU CU CAUG \
ACUGG ACGGUUC CCUGUG GACA GA GUAC G
UAGAAACCCGUCGUCGUUAA^ GG- CCU U - - CAGUCAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Star sequence |
Ovu-Mir-1994-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- AGAGUGGACACUCUGUUCUACAUG -24
Get sequence
|
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| Mature sequence |
Ovu-Mir-1994-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UGAGACAGUGUGUCCUCCCUUG -63
Get sequence
|
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