| MirGeneDB ID | Cgi-Mir-1994-P1 |
|---|
| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-1994-P2
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| Orthologues |
Cte-Mir-1994
Efe-Mir-1994
Esc-Mir-1994-P1
Lgi-Mir-1994-P1
Npo-Mir-1994-P1
Obi-Mir-1994-P1
Ovu-Mir-1994-P1
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| Node of Origin (locus) |
Mollusca
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| Node of Origin (family) |
Lophotrochozoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold950: 63993-64049 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACCCAAGCAGUUCCUAGUCACUUGUUGAUGCGGAAGGCCUCGCUUGUCUCCAUGAUUAUUUAACAUGAGACAGUGUGUCCUCCCUUGUCACGUGAUUUAUUAACAACAGUGGCGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCCAAGCAGUUCCUAG-----| UUGU C A CCU U C AUUA
UCAC UGAUG GG AGG CGCU GUCUC AUG \
AGUG ACUGU CC UCC GUGA CAGAG UAC U
GUAGCGGUGACAACAAUUAUUU^ C--- U C UGU - - AAUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-1994-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGAAGGCCUCGCUUGUCUCCAUG -24
Get sequence
|
|---|
| Mature sequence |
Cgi-Mir-1994-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGAGACAGUGUGUCCUCCCUUG -57
Get sequence
|
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