| MirGeneDB ID | Lan-Mir-1994-P3a |
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| Family name |
MIR-1994 (all species) |
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| Seed |
GAGACAG |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-1994-P3b
Lan-Mir-1994-P4a
Lan-Mir-1994-P4b
|
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| Orthologues |
Cte-Mir-1994
Efe-Mir-1994
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Lophotrochozoa
|
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Genome context
(LinAna_1.0) |
LFEI01001236: 8383-8454 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGAUGGCGCUGUGAAAGGAACAUCAGUCUCAAGGAGGACUCACUAUCUGCAUUCUCCACGCAUGCGCGUUCAGUUGUUAAUGAGACAGUGUGUCCUCCCUCGGAUUGAGUUCUGCAUACAACCUGCCAAGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAUGGCGCUGUGAAAG---| A CAA U A G CUCCACGCAUGC
GAAC UCAGUCU GGAGGAC CACU UCU CAUU \
CUUG AGUUAGG CCUCCUG GUGA AGA GUAA G
GCGAACCGUCCAACAUACGU^ - CUC U C - UUGUUGACUUGC
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-1994-P3a_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AAGGAGGACUCACUAUCUGCAUU -23
Get sequence
|
|---|
| Mature sequence |
Lan-Mir-1994-P3a_3p |
| mirBase accession | None |
|---|
| Sequence |
50- UGAGACAGUGUGUCCUCCCUCG -72
Get sequence
|
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