Mir-193-P2a4

MirGeneDB ID

Xla-Mir-193-P2a4

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xla-Mir-193-P2a3

Orthologues

Ami-Mir-193-P2a Bge-Mir-193-P2 Bta-Mir-193-P2a Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2a Cgi-Mir-193-P2 Cli-Mir-193-P2a Cmi-Mir-193-P2a Cpi-Mir-193-P2a Cpo-Mir-193-P2a Cte-Mir-193-P2 Dno-Mir-193-P2a Dre-Mir-193-P2a Ebu-Mir-193-P2 Ete-Mir-193-P2a Gga-Mir-193-P2a Hme-Mir-193-P2 Hsa-Mir-193-P2a Lch-Mir-193-P2a Lgi-Mir-193-P2 Loc-Mir-193-P2a Mdo-Mir-193-P2a Mml-Mir-193-P2a Mmu-Mir-193-P2a Mun-Mir-193-P2a Oan-Mir-193-P2a Ocu-Mir-193-P2a Pbv-Mir-193-P2a Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Rno-Mir-193-P2a Sha-Mir-193-P2a Sko-Mir-193-P2 Spt-Mir-193-P2a Spu-Mir-193-P2 Sto-Mir-193-P2a Tca-Mir-193-P2 Tgu-Mir-193-P2a Xbo-Mir-193-P2 Xtr-Mir-193-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030741.1: 80385641-80385701 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUAUACAGCUGUAUACCGCAGGGAAAAUAAGGGACUUUUGGGGGCAGAUGUGUUUCACUUACACUACCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAGUGUUCUUCAGAAUCUCUG

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Structure

        10          20        30        40        50        60 
CCUAUACAGCUGUAUACC--|      A        AC           GA    UUUCACU 
                    GCAGGGA AAUAAGGG  UUUUGGGGGCA  UGUG       \
                    CGUUCUU UUAUUCCU  AAAAUCCCCGU  AUAC       U
GUCUCUAAGACUUCUUGUGA^      G        A-           A-    CAUCACA 
 .       110       100        90         80         70

Deep sequencing

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Comment

Although the 3' terminal U is templated it is assumed that this is post-transcriptionally added similar to other vertebrates.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-193-P2a4_5p*

mirBase accession

None

Sequence

0- AGGGACUUUUGGGGGCAGAUGUG -23

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Mature sequence

Xla-Mir-193-P2a4_3p

mirBase accession

None

Sequence

40- UAAUGCCCCUAAAAAUCCUUA -61

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