| MirGeneDB ID | Lch-Mir-193-P2a |
|---|---|
| Family name | MIR-193 (all species) |
| Seed | AAUGCCC |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-193-P1a Lch-Mir-193-P1b Lch-Mir-193-P2b |
| Orthologues | Ami-Mir-193-P2a Bge-Mir-193-P2 Bta-Mir-193-P2a Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2a Cgi-Mir-193-P2 Cli-Mir-193-P2a Cmi-Mir-193-P2a Cpi-Mir-193-P2a Cpo-Mir-193-P2a Cte-Mir-193-P2 Dno-Mir-193-P2a Dre-Mir-193-P2a Ebu-Mir-193-P2 Ete-Mir-193-P2a Gga-Mir-193-P2a Hme-Mir-193-P2 Hsa-Mir-193-P2a Lgi-Mir-193-P2 Loc-Mir-193-P2a Mdo-Mir-193-P2a Mml-Mir-193-P2a Mmu-Mir-193-P2a Mun-Mir-193-P2a Oan-Mir-193-P2a Ocu-Mir-193-P2a Pbv-Mir-193-P2a Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Rno-Mir-193-P2a Sha-Mir-193-P2a Sko-Mir-193-P2 Spt-Mir-193-P2a Spu-Mir-193-P2 Sto-Mir-193-P2a Tca-Mir-193-P2 Tgu-Mir-193-P2a Xbo-Mir-193-P2 Xla-Mir-193-P2a3 Xla-Mir-193-P2a4 Xtr-Mir-193-P2a |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH127571.1: 680849-680910 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CCUGCAUUGCUGCAUACUGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCAGUGUACACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCUUCUGGGUUCUCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCUGCAUUGCUGCAUAC--| AA AC GA UUUCAGU UGCAGGG AAUGAGGG UUUUGGGGGCA UGUG G ACGUUCU UUAUUCCU AAAAUCCCCGU AUAC U UCUCUUGGGUCUUCUUAUG^ CG A- A- UAUCACA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-193-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGGACUUUUGGGGGCAGAUGUG -23
Get sequence
|
| Mature sequence | Lch-Mir-193-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- UAAUGCCCCUAAAAAUCCUUA -62
Get sequence
|
