MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-188-P1

Family name MIR-188 (all species)
Seed AUCCCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-188
Paralogues Rno-Mir-188-P2 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Hsa-Mir-188-P1  Mml-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 16110280-16110339 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P2 chrX: 16109880-16109938 [+] UCSC Ensembl
Mir-188-P1 chrX: 16110280-16110339 [+] UCSC Ensembl
Mir-362-P1 chrX: 16117174-16117232 [+] UCSC Ensembl
Mir-362-P3 chrX: 16117887-16117946 [+] UCSC Ensembl
Mir-362-P4 chrX: 16121342-16121402 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUGAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGCGAGCUCUCUGAAAACUCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCCUUGCUCUC
Get precursor sequence
Structure
        10          20         30        40        50         
AGAGUGAACCCUUCCCU--    -| UC   CA  UC         GU      CGAGCUC 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCU       C
CUCUCGUUCCUUUCGACUU    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
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Mature sequence

Rno-Mir-188-P1_5p
mirBase accessionMIMAT0005301
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGC -22
Get sequence
Proposed targets microrna.org: MIMAT0005301
TargetScanVert: rno-miR-188-5p
miRDB: MIMAT0005301
Star sequence

Rno-Mir-188-P1_3p*
mirBase accessionMIMAT0017297
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence
Proposed targets TargetScanVert: rno-miR-188-3p
miRDB: MIMAT0017297