Mir-362-P4

MirGeneDB ID

Rno-Mir-362-P4

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-500

Paralogues

Rno-Mir-362-P1 Rno-Mir-362-P3

Orthologues

Bta-Mir-362-P4 Cfa-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Mml-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 16121342-16121402 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P2 chrX: 16109880-16109938 [+] UCSC Ensembl
Mir-188-P1 chrX: 16110280-16110339 [+] UCSC Ensembl
Mir-362-P1 chrX: 16117174-16117232 [+] UCSC Ensembl
Mir-362-P3 chrX: 16117887-16117946 [+] UCSC Ensembl
Mir-362-P4 chrX: 16121342-16121402 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGAUCCUUCUCCUCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUUAGUGCUAUCUCAAUGCAAUGCACCUGGGCAAGGGUUCAGAGAAGGUGAGCUCAUCUGCAGCAAGAAGGA

Get precursor sequence

Structure

        10          20        30         40        50        60 
CCUGAUCCUUCUCCUCU--    C  C     -|        UAU UG     UUA  GCUAU 
                   GCUC CC UCUCU AAUCCUUGC   C  GGUGC   GU     \
                   CGAG GG AGAGA UUGGGAACG   G  CCACG   CG     C
AGGAAGAACGACGUCUACU    U  A     C^        --- GU     UAA  UAACU 
 .       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-362-P4_5p*

mirBase accession

MIMAT0017311

Sequence

0- AAUCCUUGCUAUCUGGGUGCUUAGU -25

Get sequence

Proposed targets

TargetScanVert: rno-miR-500-5p
miRDB: MIMAT0017311

Mature sequence

Rno-Mir-362-P4_3p

mirBase accession

MIMAT0005321

Sequence

38- AAUGCACCUGGGCAAGGGUUCAG -61

Get sequence

Proposed targets

microrna.org: MIMAT0005321
TargetScanVert: rno-miR-500-3p
miRDB: MIMAT0005321