Mir-362-P4

MirGeneDB ID

Bta-Mir-362-P4

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-502a-1

Paralogues

Bta-Mir-362-P1 Bta-Mir-362-P2-v1 Bta-Mir-362-P2-v2 Bta-Mir-362-P2-v3 Bta-Mir-362-P5 Bta-Mir-362-P6

Orthologues

Cfa-Mir-362-P4 Cpo-Mir-362-P4 Dno-Mir-362-P4 Ete-Mir-362-P4 Hsa-Mir-362-P4 Mml-Mir-362-P4 Mmu-Mir-362-P4 Ocu-Mir-362-P4 Rno-Mir-362-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87742037-87742095 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P4)

Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUGAGCCAUCUGCCCUGCCCACCCCUCUAAUCCUUGCUCUCUGGGUGCUAGUGCUGUCUCCAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGGGCUGAACUGCACCAAGGACA

Get precursor sequence

Structure

        10        20         30         40        50        60 
GCUUGAGCCAUCUGCCCU        -    -|          UCU      UAG   UGUC 
                  GCCCACCC CUCU AAUCCUUGCUC   GGGUGC   UGC    \
                  CGGGUGGG GAGA UUAGGAACGGG   UCCACG   ACG    U
ACAGGAACCACGUCAAGU        A    C^          ---      UA-   UACC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P4_5p* (predicted)

mirBase accession

None

Sequence

0- AAUCCUUGCUCUCUGGGUGCUAGUGC -26

Get sequence

Mature sequence

Bta-Mir-362-P4_3p

mirBase accession

MIMAT0009338

Sequence

37- AAUGCACCUGGGCAAGGAUUCA -59

Get sequence

Proposed targets

TargetScanVert: bta-miR-502a