Mir-362-P6

MirGeneDB ID

Bta-Mir-362-P6

Family name

MIR-362 (all species)

Seed

AUGCACC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-502a-2

Paralogues

Bta-Mir-362-P1 Bta-Mir-362-P2-v1 Bta-Mir-362-P2-v2 Bta-Mir-362-P2-v3 Bta-Mir-362-P4 Bta-Mir-362-P5

Orthologues

Ocu-Mir-362-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87732068-87732125 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P6)

Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUAGUUUUCUGCUCUGUUCCCCUGUAUCCAAUCUUAAUGCCCAGAUGCAGGUACUGUCUCAGUGCAAUGCACCUGGGCAAGGAUUCACAGAAGAUAAGUGUCUUCUGCACAGAGAAG

Get precursor sequence

Structure

        10             20        30        40        50          
CCUAGUUUUCUGCUCUGU-----| CC    AUCC      AA       A    G-   CUGU 
                       UC  CUGU    AAUCUU  UGCCCAG UGCA  GUA    \
                       AG  GACA    UUAGGA  ACGGGUC ACGU  CGU    C
GAAGAGACACGUCUUCUGUGAAU^ AA    C---      --       C    AA   GACU 
      110       100        90             80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P6_5p* (predicted)

mirBase accession

None

Sequence

0- AAUCUUAAUGCCCAGAUGCAGGUA -24

Get sequence

Mature sequence

Bta-Mir-362-P6_3p

mirBase accession

MIMAT0009338

Sequence

36- AAUGCACCUGGGCAAGGAUUCA -58

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Proposed targets

TargetScanVert: bta-miR-502a