MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-188-P1

Family name MIR-188 (all species)
Seed AUCCCUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-188
Paralogues Cfa-Mir-188-P2  Cfa-Mir-188-P3 
Orthologues Bta-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Hsa-Mir-188-P1  Mml-Mir-188-P1  Mmu-Mir-188-P1  Ocu-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 42775072-42775131 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-188-P2 chrX: 42774680-42774738 [+] UCSC Ensembl
Mir-188-P1 chrX: 42775072-42775131 [+] UCSC Ensembl
Mir-362-P2-v1 chrX: 42779871-42779932 [+] UCSC Ensembl
Mir-362-P2-v2 chrX: 42779872-42779931 [+] UCSC Ensembl
Mir-362-P1 chrX: 42780369-42780427 [+] UCSC Ensembl
Mir-188-P3 chrX: 42783965-42784023 [+] UCSC Ensembl
Mir-362-P4 chrX: 42785601-42785660 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUGAGCCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUUUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCAGCUUUCCUUGCUCUC
Get precursor sequence
Structure
        10          20         30        40        50         
AGAGUGAGCCUUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       U
CUCUCGUUCCUUUCGACUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-188-P1_5p
mirBase accessionMIMAT0009880
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-188
miRDB: MIMAT0009880
Star sequence

Cfa-Mir-188-P1_3p*
mirBase accessionNone
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence