Mir-71-P18

MirGeneDB ID

Sme-Mir-71-P18

Family name

MIR-71 (all species)

Seed

GAAAGAC

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-71c

Paralogues

Sme-Mir-71-P16a Sme-Mir-71-P16b Sme-Mir-71-P17 Sme-Mir-71-P19

Orthologues

Aae-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cgi-Mir-71 Cte-Mir-71 Dma-Mir-71 Dpu-Mir-71 Esc-Mir-71 Hme-Mir-71 Isc-Mir-71 Lgi-Mir-71 Npo-Mir-71 Obi-Mir-71 Ovu-Mir-71 Pfl-Mir-71 Pmi-Mir-71 Sko-Mir-71 Spu-Mir-71 Tca-Mir-71

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000006_dd_Smes_g4_6: 2195478-2195544 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-P18)

Mir-71-P18 NNSW01000006_dd_Smes_g4_6: 2195478-2195544 [+] UCSC Ensembl
Mir-2-o55 NNSW01000006_dd_Smes_g4_6: 2195588-2195642 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUUUAGAAAGUUUAUGUUGUAGUUUUCUUGAAAGACAUGGGUAGUGAGAUUAUUUAAAUUAAAUAUUUAAAAUCUCAUUAUUCAAGUUUUUCUUAUAAGCUACUAUUUAUCGUCAUUAUUUCUUU

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Structure

        10        20          30        40        50        60   
AUGUUUAGAAAGUUUAUGUU--|      UCUU       A             UAUUUAAAUU 
                      GUAGUUU    GAAAGAC UGGGUAGUGAGAU          \
                      CAUCGAA    CUUUUUG ACUUAUUACUCUA          A
UUUCUUUAUUACUGCUAUUUAU^      UAUU       A             AAAUUUAUAA 
     120       110       100        90        80        70

Deep sequencing

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Comment

There appears to be a U to C edit in position 1 of the 5p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-71-P18_5p

mirBase accession

MIMAT0003987

Sequence

0- UGAAAGACAUGGGUAGUGAGAU -22

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Co-mature sequence

Sme-Mir-71-P18_3p

mirBase accession

MIMAT0012107

Sequence

45- CUCAUUAUUCAAGUUUUUCUUA -67

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