MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-71-P16a

Family name MIR-71 (all species)
Seed AUGAAAG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-71a-1
Paralogues Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19 
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lgi-Mir-71  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000035_dd_Smes_g4_35: 577782-577843 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-P16a)		 Mir-71-P16a NNSW01000035_dd_Smes_g4_35: 577782-577843 [+] UCSC Ensembl
Mir-2-o51a NNSW01000035_dd_Smes_g4_35: 577882-577946 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUGAAUUUAAUUCAAUUUUAAAUGCAUGAAUGAAAGACACGGGUAGUGAGAUAAGCUAUAUAUCAUCUCAUUGCCAAUGUCUUUUAAACGUGUUAUUUAACGAUCGUAAUAUCAGUUCAU
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Structure
        10         20         30        40        50        60
AUGUGAAUUUAAUUCAAUU-      -|    AA         CG           AAGCU 
                    UUAAAU GCAUG  UGAAAGACA  GGUAGUGAGAU     A
                    AAUUUA UGUGC  AUUUUCUGU  CCGUUACUCUA     U
UACUUGACUAUAAUGCUAGC      U^    AA         AA           CUAUA 
120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-71-P16a_5p
mirBase accessionMIMAT0003984
Sequence 
0- AAUGAAAGACACGGGUAGUGAGAU -24
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Star sequence

Sme-Mir-71-P16a_3p*
mirBase accessionMIMAT0012106
Sequence 
38- CUCAUUGCCAAUGUCUUUUAAACG -62
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