MirGeneDB 2.1
MirGeneDB ID

Isc-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-71
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(IscaWI)		 DS799611: 45706-45768 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-2-P4 DS799611: 45175-45234 [-] Ensembl
Mir-2-P1 DS799611: 45564-45628 [-] Ensembl
Mir-71 DS799611: 45706-45768 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGGGAGGAGUUUGCAGUGUUGAUUCCCUGAAAGACAUGGGUAGUGAGAUGAGUUUGACUGCAUUGCCAUCUCACUACCUUGUCUUUGUUGGAAAUAGCACGUGCAGUGUCGGCGGCUGCA
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Structure
        10          20        30        40        50        60 
GAGGGGGAGGAGUUUGCA--|     A    CUG       U             AGUUUGA 
                    GUGUUG UUCC   AAAGACA GGGUAGUGAGAUG       C
                    CACGAU AAGG   UUUCUGU UCCAUCACUCUAC       U
ACGUCGGCGGCUGUGACGUG^     A    UUG       -             CGUUACG 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Al Mi Mi Mi Sa Sa Sa Sa To
Mature sequence

Isc-Mir-71_5p
mirBase accessionMIMAT0012703
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Co-mature sequence

Isc-Mir-71_3p
mirBase accessionNone
Sequence 
41- UCUCACUACCUUGUCUUUGUUG -63
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