Mir-12-P10

MirGeneDB ID

Sme-Mir-12-P10

Family name

MIR-12 (all species)

Seed

GAGUAUU

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-2157

Paralogues

Sme-Mir-12-P9 Sme-Mir-12-P11

Orthologues

Aae-Mir-12 Bge-Mir-12 Bpl-Mir-12 Cgi-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dma-Mir-12 Dme-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Esc-Mir-12 Hme-Mir-12 Isc-Mir-12 Lgi-Mir-12 Npo-Mir-12 Ovu-Mir-12 Tca-Mir-12

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000085_dd_Smes_g4_85: 414521-414575 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12-P10)

Mir-216-P2l NNSW01000085_dd_Smes_g4_85: 414251-414315 [+] UCSC Ensembl
Mir-12-P10 NNSW01000085_dd_Smes_g4_85: 414521-414575 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUACAAACUUAAAGGUGCAGUCAAAUUUUGAGUAUUGCAUCAAGAACCGAAUGUUAAUAUCAGUUUUUGAUGAAUUACUUAAAUUAAGCUCCUCUAAUCUCUUAUUUAUUAUA

Get precursor sequence

Structure

        10        20           30        40        50       
UAGUACAAACUUAAAGGUGC---|  CAAAU        UUG          C  AUGU 
                       AGU     UUUGAGUA   CAUCAAGAAC GA    \
                       UCG     AAAUUCAU   GUAGUUUUUG CU    U
AUAUUAUUUAUUCUCUAAUCUCC^  AAUU-        UAA          A  AUAA 
   110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-12-P10_5p

mirBase accession

MIMAT0011250

Sequence

0- UGAGUAUUGCAUCAAGAACCGA -22

Get sequence

Star sequence

Sme-Mir-12-P10_3p*

mirBase accession

MIMAT0012148

Sequence

33- AGUUUUUGAUGAAUUACUUAAA -55

Get sequence