Mir-12

MirGeneDB ID

Dme-Mir-12

Family name

MIR-12 (all species)

Seed

GAGUAUU

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-12

Paralogues

Orthologues

Aae-Mir-12 Bge-Mir-12 Bpl-Mir-12 Cgi-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dma-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Efe-Mir-12-P1 Efe-Mir-12-P2 Esc-Mir-12 Hme-Mir-12 Isc-Mir-12 Lan-Mir-12-P3 Lan-Mir-12-P4 Lgi-Mir-12 Lpo-Mir-12-P5 Lpo-Mir-12-P6 Lpo-Mir-12-P7 Lpo-Mir-12-P8 Npo-Mir-12 Ovu-Mir-12 Sme-Mir-12-P9 Sme-Mir-12-P10 Sme-Mir-12-P11 Tca-Mir-12

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

X: 15509479-15509542 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12)

Mir-216-P1 X: 15507976-15508044 [+] UCSC Ensembl
Mir-216-P2 X: 15508970-15509037 [+] UCSC Ensembl
Mir-12 X: 15509479-15509542 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCUGUACGAAGGAGCAGCGUCUGUACGGUUGAGUAUUACAUCAGGUACUGGUGUGCCUUAAAUCCAACAACCAGUACUUAUGUCAUACUACGCCGUGCACGGAUCGCACUAACCGCAUGACCA

Get precursor sequence

Structure

        10            20        30        40        50        60  
GUCUGUACGAAGGAGCAG----|  CU       UG     U    C          GUGCCUUA 
                      CGU  GUACGGU  AGUAU ACAU AGGUACUGGU        \
                      GCA  CGUGCCG  UCAUA UGUA UUCAUGACCA        A
ACCAGUACGCCAAUCACGCUAG^  --       CA     C    -          ACAACCUA 
  120       110       100          90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	He	L3	Fe	Fe	La	Wh

Mature sequence

Dme-Mir-12_5p

mirBase accession

MIMAT0000117

Sequence

0- UGAGUAUUACAUCAGGUACUGGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000117

Star sequence

Dme-Mir-12_3p*

mirBase accession

MIMAT0020794

Sequence

42- CAGUACUUAUGUCAUACUACGC -64

Get sequence