Mir-506-P6

MirGeneDB ID

Rno-Mir-506-P6

Family name

MIR-506 (all species)

Seed

UCACAAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-3585

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2 Rno-Mir-506-P7 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P20 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25 Rno-Mir-506-P26 Rno-Mir-506-P28

Orthologues

Bta-Mir-506-P6 Cpo-Mir-506-o6 Cpo-Mir-506-P6 Ete-Mir-506-P6e Ete-Mir-506-P6f Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c1 Mml-Mir-506-P6c2 Ocu-Mir-506-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155344207-155344263 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6)

Mir-506-P7 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2 chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P1 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P6 chrX: 155344207-155344263 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUGGAGCAAAUCUGUGUGCAGUGCUUUUCACAAGAAGGUGUCUUUCAUGGGGAUUAAAACAUGAACGGCCCUUGUUGUGAGGAGUAAUGUACAACAUGUAAUGCCUGUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUGGAGCAAAUCUG--|     G            G    U   U      GGGA 
                    UGUGCA UGCUUUUCACAA AAGG GUC UUCAUG    U
                    ACAUGU AUGAGGAGUGUU UUCC CGG AAGUAC    U
UGGUGUGUCCGUAAUGUACA^     A            G    -   C      AAAA 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-506-P6_5p

mirBase accession

MIMAT0017878

Sequence

0- UUCACAAGAAGGUGUCUUUCAUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-3585-5p
miRDB: MIMAT0017878

Star sequence

Rno-Mir-506-P6_3p*

mirBase accession

MIMAT0017879

Sequence

35- UGAACGGCCCUUGUUGUGAGGA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-3585-3p
miRDB: MIMAT0017879