Mir-506-P6

MirGeneDB ID

Ocu-Mir-506-P6

Family name

MIR-506 (all species)

Seed

UCACAAG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-513

Paralogues

Ocu-Mir-506-P1 Ocu-Mir-506-P2 Ocu-Mir-506-P3 Ocu-Mir-506-P5 Ocu-Mir-506-P7d Ocu-Mir-506-P7e

Orthologues

Bta-Mir-506-P6 Cpo-Mir-506-o6 Cpo-Mir-506-P6 Ete-Mir-506-P6e Ete-Mir-506-P6f Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c1 Mml-Mir-506-P6c2 Rno-Mir-506-P6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0002: 10678464-10678522 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6)

Mir-506-P6 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P7e chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P1 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2 chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P7d chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P5 chrUn0002: 10723771-10723827 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCUAUUCAGUGUGCAGUGCCUUUCACAAGAAGGUGUCAUUCAUGUGAACCAAAAAUAUGAAUGAUGCCUUUUUGAGAAAAGUAAUGUACAUCAUGAAAUGCAUAUGUGGC

Get precursor sequence

Structure

        10          20        30        40        50         
CCACAUUCAGCUAUUCA--|      G   C    A                   UGAAC 
                   GUGUGCA UGC UUUC CAAGAAGGUGUCAUUCAUG     \
                   UACAUGU AUG AAAG GUUUUUCCGUAGUAAGUAU     C
CGGUGUAUACGUAAAGUAC^      A   A    A                   AAAAA 
       110       100        90        80        70        60