MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-506-P5

Family name MIR-506 (all species)
Seed GAUUGAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-509a
Paralogues Ocu-Mir-506-P1  Ocu-Mir-506-P2  Ocu-Mir-506-P3  Ocu-Mir-506-P6  Ocu-Mir-506-P7d  Ocu-Mir-506-P7e 
Orthologues Cpo-Mir-506-o5  Hsa-Mir-506-P5  Mml-Mir-506-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P5)		 Mir-506-P6 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P7e chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P1 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2 chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P7d chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P5 chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUAUGUUGACUUGCUGUGUGUGGUACCCUACUCCAGAGAGUGACAAUCAUGUAUUAUUUAAUAUGAUUGAAACCUCUGAGAGUGAGUAACACAUGACACAAACAACAUAUAUGAU
Get precursor sequence
Structure
        10          20        30         40        50        
AUUUAUGUUGACUUGCU-  -|    G   CC     -     A  GA        UAUU 
                  GU GUGUG UAC  UACUC CAGAG GU  CAAUCAUG    A
                  CA UACAC AUG  GUGAG GUCUC CA  GUUAGUAU    U
UAGUAUAUACAACAAACA  G^    A   A-     A     -  AA        AAUU 
     110       100        90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-506-P5_5p*
mirBase accessionMIMAT0048511
Sequence 
0- UACUCCAGAGAGUGACAAUCAUG -23
Get sequence
Mature sequence

Ocu-Mir-506-P5_3p
mirBase accessionMIMAT0048512
Sequence 
35- UGAUUGAAACCUCUGAGAGUGA -57
Get sequence