Mir-506-P7

MirGeneDB ID

Rno-Mir-506-P7

Family name

MIR-506 (all species)

Seed

ACUCCAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-509

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2 Rno-Mir-506-P6 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P20 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25 Rno-Mir-506-P26 Rno-Mir-506-P28

Orthologues

Cfa-Mir-506-P7 Cpo-Mir-506-o7a Cpo-Mir-506-o7b Cpo-Mir-506-o7c Dno-Mir-506-P7f Dno-Mir-506-P7g Dno-Mir-506-P7h Dno-Mir-506-P7i Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Mml-Mir-506-P7a Mmu-Mir-506-P7 Ocu-Mir-506-P7d Ocu-Mir-506-P7e

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155317221-155317277 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P7)

Mir-506-P7 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2 chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P1 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P6 chrX: 155344207-155344263 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUGAUCAUGACAACUGUGUGUGGUUCUUUACUCCAGAAUAUGGCAAUCAUGCAUAAUUAAAUGUGAUUGACAUGUCUGCAGUGGAGUAACACAUGCAAUAUAUGGCAUGUGCAGU

Get precursor sequence

Structure

        10          20        30        40        50        
AGUUGAUCAUGACAACU--|      GUU       C    A    G       GCAUA 
                   GUGUGUG   CUUUACU CAGA UAUG CAAUCAU     A
                   CGUACAC   GAGGUGA GUCU GUAC GUUAGUG     U
UGACGUGUACGGUAUAUAA^      AAU       C    -    A       UAAAU 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-506-P7_5p

mirBase accession

MIMAT0024849

Sequence

0- UACUCCAGAAUAUGGCAAUCAUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-509-5p
miRDB: MIMAT0024849

Co-mature sequence

Rno-Mir-506-P7_3p

mirBase accession

MIMAT0024850

Sequence

35- UGAUUGACAUGUCUGCAGUGGA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-509-3p
miRDB: MIMAT0024850