Mir-506-P28

MirGeneDB ID

Rno-Mir-506-P28

Family name

MIR-506 (all species)

Seed

CUUCACC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-3551

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2 Rno-Mir-506-P6 Rno-Mir-506-P7 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P20 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25 Rno-Mir-506-P26

Orthologues

Node of Origin (locus)

R. norvegicus

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 151272836-151272891 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P28)

Mir-506-P20 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P21 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P19 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P26 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P17 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P28 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P14 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P24 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P23 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P25 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P22 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P15 chrX: 151297377-151297433 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAUUUUAAGUAUCCUAUGGGCAGUACUGUCUUCACCAUGGUGUUUUUGACAUAAGUAGCUAUGAAAUUCACCAUGGUGGGUAAAGUAAGGCUCAUAAUUCUCUCGUUUGUUGUG

Get precursor sequence

Structure

        10          20        30        40        50        
AGAAUUUUAAGUAUCCU--|     AG    GUC            UU   GA   AAG 
                   AUGGGC  UACU   UUCACCAUGGUG  UUU  CAU   U
                   UACUCG  AUGA   GGGUGGUACCAC  AAA  GUA   A
GUGUUGUUUGCUCUCUUAA^     GA    AAU            UU   --   UCG 
    110       100        90        80        70          60

Deep sequencing

Go to detailed chart

Comment

There is a one nucleotide polymorphism in the 3p arm in the assembled sequence relative to the read data.

3' NTU

Motifs

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-506-P28_5p

mirBase accession

MIMAT0017809

Sequence

0- UCUUCACCAUGGUGUUUUUGACAU -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-3551-5p
miRDB: MIMAT0017809

Star sequence

Rno-Mir-506-P28_3p*

mirBase accession

MIMAT0017810

Sequence

33- UGAAAUUCACCAUGGUGGGUAAA -56

Get sequence

Proposed targets

TargetScanVert: rno-miR-3551-3p
miRDB: MIMAT0017810