MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-194-o1

Family name MIR-194 (all species)
Seed GUAACAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046074.1: 5107960-5108016 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUUUGUGCCACCCACAGUGUGCAUCAGGUGUAACAGCAACUCCAUGUGGAUGUUCCAUCGCUCCCAGUGGAGUUACUGUUACUUUUGAUGGACAUUCACUUGAACAUCGACUGCU
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Structure
        10          20        30        40        50        
CUGUUUGUGCCACCCAC--|    G       U       C        GU   UGUUC 
                   AGUGU CAUCAGG GUAACAG AACUCCAU  GGA     \
                   UUACA GUAGUUU CAUUGUC UUGAGGUG  CCU     C
UCGUCAGCUACAAGUUCAC^    G       U       A        AC   CGCUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-194-o1_5p
mirBase accessionNone
Sequence 
0- UGUAACAGCAACUCCAUGUGGA -22
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Star sequence

Pma-Mir-194-o1_3p*
mirBase accessionNone
Sequence 
35- CCAGUGGAGUUACUGUUACUUU -57
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