MirGeneDB 2.1
MirGeneDB ID

Cbr-Bantam-P4

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-82
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3 
Orthologues Aae-Bantam  Bge-Bantam  Bpl-Bantam  Cel-Bantam-P4  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 X: 4356782-4356845 [+] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P4)		 Bantam-P4 X: 4356782-4356845 [+] Ensembl
Bantam-P3 X: 4359703-4359767 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAAAACUAUAAAAAGUUCUUCUAGCGACAGGUUUUCGCCGUGAUCUGCAGAGUUCCAUGAAGAAAACAUCUGAGAUCAUCGUGAAAGCCAGUUGCUUAAGAGGACUCAUUGUGAAAAACUAG
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Structure
        10        20          30        40        50        60  
AUUAAAACUAUAAAAAGU      --|     A         C       G    GUUCCAUG 
                  UCUUCU  AGCGAC GGUUUUCGC GUGAUCU CAGA        \
                  AGGAGA  UCGUUG CCGAAAGUG UACUAGA GUCU        A
GAUCAAAAAGUGUUACUC      AU^     A         C       -    ACAAAAGA 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Bantam-P4_5p*
mirBase accessionNone
Sequence 
0- AGGUUUUCGCCGUGAUCUGCAGA -23
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Mature sequence

Cbr-Bantam-P4_3p
mirBase accessionMIMAT0000489
Sequence 
42- UGAGAUCAUCGUGAAAGCCAGU -64
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