| MirGeneDB ID | Cbr-Bantam-P1b |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-58b
|
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| Paralogues |
Cbr-Bantam-P1a
Cbr-Bantam-P2
Cbr-Bantam-P3
Cbr-Bantam-P4
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| Orthologues |
Aae-Bantam
Asu-Bantam-o1
Bge-Bantam
Bpl-Bantam
Cel-Bantam-P1
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
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| Node of Origin (locus) |
C. briggsae
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| Node of Origin (family) |
Protostomia
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Genome context
(CB4) |
IV: 149584-149644 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUAUAUAAAAAUUGAAAUUUUCAAUACGUUGGCUUUUUGGCUGGUCUCAUACCGUUUAGUACUGGAUAUGAGAUCAUUCAAGAAGCCCAAAAAAGAGUUCAUUUCAUUCGAAACAUGCUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAUAUAAAAAUUGAAAUUUUCAAUACGUU----| GC CCGUUUA
GGCUUUUUG UGGUCUCAUA \
CCGAAGAAC ACUAGAGUAU G
UAUCGUACAAAGCUUACUUUACUUGAGAAAAAAC^ UU AGGUCAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
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| Star sequence |
Cbr-Bantam-P1b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUUUUUGGCUGGUCUCAUA -21
Get sequence
|
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| Mature sequence |
Cbr-Bantam-P1b_3p |
| mirBase accession | MIMAT0011482 |
|---|
| Sequence |
38- UGAGAUCAUUCAAGAAGCCCAAA -61
Get sequence
|
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