Mir-2-P2f

MirGeneDB ID

Tca-Mir-2-P2f

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-13b

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2e Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P7 Tca-Mir-2-P8 Tca-Mir-2-P10a Tca-Mir-2-P10b Tca-Mir-2-P10c

Orthologues

Aae-Mir-2-P2 Bge-Mir-2-P2 Dma-Mir-2-o2 Dma-Mir-2-P2 Dpu-Mir-2-o2 Dpu-Mir-2-P2

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG3: 561066-561124 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2f)

Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2e LG3: 560954-561011 [+] Ensembl
Mir-2-P2f LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGACGUGGAUUUAAUUGGUCGGUGCCCUAUCAGUCAAUUUGGUUGUGAAACCUAGUAUUUAUUCGGGUAUCACAGCCAUUUUGACGAGUUUGGUUGACGACCUAUUCAUCGAAGAAUCA

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Structure

        10         20         30        40        50         
CGACGUGGAUUUAAUUG-    GU-|  CU  CA     UU         A   UAGUAU 
                  GUCG   GCC  AU  GUCAA  UGGUUGUGA ACC      \
                  CAGC   UGG  UG  CAGUU  ACCGACACU UGG      U
ACUAAGAAGCUACUUAUC    AGU^  UU  AG     UU         A   GCUUAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P2f_5p*

mirBase accession

MIMAT0019104

Sequence

0- CAGUCAAUUUGGUUGUGAAACC -22

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Mature sequence

Tca-Mir-2-P2f_3p

mirBase accession

MIMAT0008360

Sequence

37- UAUCACAGCCAUUUUGACGAGU -59

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