MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-2-P2e

Family name MIR-2 (all species)
Seed AUCACAG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-13a
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2  Tca-Mir-2-P2f  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2  Tca-Mir-2-P7  Tca-Mir-2-P8  Tca-Mir-2-P10a  Tca-Mir-2-P10b  Tca-Mir-2-P10c 
Orthologues Aae-Mir-2-P2  Bge-Mir-2-P2  Dma-Mir-2-o2  Dma-Mir-2-P2  Dpu-Mir-2-o2  Dpu-Mir-2-P2 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 560954-561011 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P2e)		 Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2e LG3: 560954-561011 [+] Ensembl
Mir-2-P2f LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGAGAAGAAGUUGUGGAGAUGCCCAAGUCGUCAAUUUGGUUGUGAACUCUUAAUUUAAACGAUAUCACAGCCACUUUGAUGAGCUUGGUUGUCUUUAAAGUCAUCAGUUCGACGU
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Structure
        10          20        30         40        50        
GGAAGAGAAGAAGUUGU--      GC     -|      UU         AC  UUAAU 
                   GGAGAU  CCAAG UCGUCAA  UGGUUGUGA  UC     \
                   UUUCUG  GGUUC AGUAGUU  ACCGACACU  AG     U
UGCAGCUUGACUACUGAAA      UU     G^      UC         AU  CAAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P2e_5p*
mirBase accessionMIMAT0019103
Sequence 
0- UCGUCAAUUUGGUUGUGAACUC -22
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Mature sequence

Tca-Mir-2-P2e_3p
mirBase accessionMIMAT0008359
Sequence 
35- UAUCACAGCCACUUUGAUGAGCU -58
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