MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-873
Paralogues Rno-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(rn6)		 chr5: 52481085-52481143 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-876 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACCUGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACC
Get precursor sequence
Structure
        10          20        30        40        50         
ACACCUGCUUAAAAUCA--|      UGCAUUUGCA         G        AUUGAA 
                   GUUUGUG          GGAACUUGU AGUCUCCU      \
                   UAAACAC          CCUUGAACA UCAGAGGA      A
CCAUCUUUACUCAUCCUUC^      CCACAAGGGC         G        CAGGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-873-v1_5p
mirBase accessionMIMAT0005339
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Proposed targets microrna.org: MIMAT0005339
TargetScanVert: rno-miR-873-5p
miRDB: MIMAT0005339
Star sequence

Rno-Mir-873-v1_3p*
mirBase accessionMIMAT0017318
Sequence 
37- GAGACUGACAAGUUCCCGGGAA -59
Get sequence
Proposed targets TargetScanVert: rno-miR-873-3p
miRDB: MIMAT0017318