MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-873
Paralogues Cpo-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Dno-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(cavPor3)		 scaffold_2: 7394199-7394257 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-873-v1 scaffold_2: 7394199-7394257 [-] UCSC
Mir-873-v2 scaffold_2: 7394200-7394256 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUGCCUGCUUAAACUGAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUAAAAAUAAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAAUCUUCCUACUCACGUGUAC
Get precursor sequence
Structure
        10          20        30        40        50         
GUGCCUGCUUAAACUGAG--|     UGCAUUUGCA      UG G        AUUAAA 
                    UUUGUG          GGAACU  U AGUCUCCU      \
                    AAACAC          CCUUGA  A UCAGAGGA      A
CAUGUGCACUCAUCCUUCUA^     CCACAAGGGC      GU G        CAAAUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-873-v1_5p
mirBase accessionMIMAT0047391
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Co-mature sequence

Cpo-Mir-873-v1_3p
mirBase accessionMIMAT0047392
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
Get sequence