MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-873a
Paralogues Mmu-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Mdo-Mir-873-v1  Mml-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(mm10)		 chr4: 36668519-36668577 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-873-v1 chr4: 36668519-36668577 [-] UCSC Ensembl
Mir-873-v2 chr4: 36668520-36668576 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCAGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUAGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUGGUUUCUACC
Get precursor sequence
Structure
        10          20        30        40        50         
GCACCAGCUUAAAAUCA--|      UGCAUUUGCA         G        AUUGAA 
                   GUUUGUG          GGAACUUGU AGUCUCCU      \
                   UAAACAC          CCUUGAACA UCAGAGGA      A
CCAUCUUUGGUCAUCCUUC^      CCACAAGGGC         G        CAGAUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-873-v1_5p
mirBase accessionMIMAT0004936
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Proposed targets microrna.org: MIMAT0004936
TargetScanVert: mmu-miR-873a-5p.1
miRDB: MIMAT0004936
Star sequence

Mmu-Mir-873-v1_3p*
mirBase accessionMIMAT0017279
Sequence 
37- GAGACUGACAAGUUCCCGGGAA -59
Get sequence
Proposed targets TargetScanVert: mmu-miR-873a-3p
miRDB: MIMAT0017279