MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-450-P2b

Family name MIR-450 (all species)
Seed UUUGCGA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-450a
Paralogues Rno-Mir-450-P1a  Rno-Mir-450-P1b  Rno-Mir-450-P2a  Rno-Mir-450-P3a  Rno-Mir-450-P3b 
Orthologues Bta-Mir-450-P2  Cfa-Mir-450-P2  Cpo-Mir-450-P2  Dno-Mir-450-P2  Hsa-Mir-450-P2  Mml-Mir-450-P2  Mmu-Mir-450-P2  Ocu-Mir-450-P2 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 158153394-158153450 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-450-P2b)		 Mir-15-P1c4 chrX: 158148183-158148240 [+] UCSC Ensembl
Mir-15-P2c4 chrX: 158148481-158148543 [+] UCSC Ensembl
Mir-542-P1c chrX: 158152156-158152216 [+] UCSC Ensembl
Mir-450-P2b chrX: 158153394-158153450 [+] UCSC Ensembl
Mir-542-P1b chrX: 158158895-158158955 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGCCCCACUAAAGAGAGAUGCGGAGCUGUUUUUGCGAUGUGUUCCUAAUGUGUGCUACAAUUAUAUUGGGAACAUUUUGCAUAAAUAGUUUUACAUCGACACACAGGCAAAGGUUG
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Structure
        10          20        30        40        50        
UAGCCCCACUAAAGAGA--|   CG         U     U             GUGCU 
                   GAUG  GAGCUGUUU UGCGA GUGUUCCUAAUGU     \
                   CUAC  UUUGAUAAA ACGUU UACAAGGGUUAUA     A
GUUGGAAACGGACACACAG^   AU         U     U             UUAAC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-450-P2b_5p
mirBase accessionMIMAT0001547
Sequence 
0- UUUUGCGAUGUGUUCCUAAUGU -22
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Proposed targets microrna.org: MIMAT0001547
TargetScanVert: rno-miR-450a-5p
miRDB: MIMAT0001547
Star sequence

Rno-Mir-450-P2b_3p*
mirBase accessionMIMAT0017183
Sequence 
35- AUUGGGAACAUUUUGCAUAAAU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-450a-3p
miRDB: MIMAT0017183