Mir-30-P2a

MirGeneDB ID

Loc-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-30-P1a Loc-Mir-30-P1b Loc-Mir-30-P1d Loc-Mir-30-P2b Loc-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG11: 8164573-8164634 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUUGCAGGUGAAUCCAAGUCAUAGUUAGUGUAAACAUCCUACACUCAGCUGUAACUUCAAAGUAAAGGCUGGGAGAAGGGUGUUUACUUUGACUAGUUUGGAAGAACGUUUAUGCAGCAA

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Structure

        10        20          30        40        50        60
GAAUUGCAGGUGAAUCCAAGUCA--|      U           ACA       GUAACUU 
                         UAGUUAG GUAAACAUCCU   CUCAGCU       C
                         AUCAGUU CAUUUGUGGGA   GGGUCGG       A
AACGACGUAUUUGCAAGAAGGUUUG^      U           AGA       AAAUGAA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

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Star sequence

Loc-Mir-30-P2a_3p*

mirBase accession

None

Sequence

40- CUGGGAGAAGGGUGUUUACUUU -62

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