MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-30-P1a  Loc-Mir-30-P1d  Loc-Mir-30-P2a  Loc-Mir-30-P2b  Loc-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG16: 10636599-10636660 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGACAAAGAUAGAUGGCAGUACUGGCAACUGUAAACAUCCUUGACUGGAAGCUGGUGCAGAAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCUAUUACCUUCAAAUCCCUCU
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Structure
        10            20        30        40        50        60 
UUGACAAAGAUAGAUGG----|   AC     A            UU           GGUGCA 
                     CAGU  UGGCA CUGUAAACAUCC  GACUGGAAGCU      G
                     GUCA  ACCGU GACGUUUGUAGG  CUGACUUUCGG      A
UCUCCCUAAACUUCCAUUAUC^   --     C            --           GGUAGA 
120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-30-P1b_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Loc-Mir-30-P1b_3p*
mirBase accessionNone
Sequence 
40- CUUUCAGUCGGAUGUUUGCAGC -62
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