MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-30a
Paralogues Cpo-Mir-30-P1a  Cpo-Mir-30-P1d  Cpo-Mir-30-P2a  Cpo-Mir-30-P2b  Cpo-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_4: 54598662-54598723 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b scaffold_4: 54598662-54598723 [+] UCSC
Mir-30-P2b scaffold_4: 54621135-54621195 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAAGUUUGACCACUGCUGACCGUGAGUGACUGUAAACAUCCUCGACUGGAAGCUGGGAGGCCAGAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCUUACCGCCUCUGACUUCAAGGAGCCAC
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Structure
        10        20          30        40        50        60 
GAAGUUUGACCACUGCUGACC--|     GA            UC           GGGAGG 
                       GUGAGU  CUGUAAACAUCC  GACUGGAAGCU      C
                       CAUUCG  GACGUUUGUAGG  CUGACUUUCGG      C
CACCGAGGAACUUCAGUCUCCGC^     UC            --           GUAAGA 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-30-P1b_5p
mirBase accessionMIMAT0046903
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Star sequence

Cpo-Mir-30-P1b_3p*
mirBase accessionMIMAT0046904
Sequence 
40- CUUUCAGUCGGAUGUUUGCAGC -62
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