Mir-30-P1b

MirGeneDB ID

Mmu-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-30a

Paralogues

Mmu-Mir-30-P1a Mmu-Mir-30-P1d Mmu-Mir-30-P2a Mmu-Mir-30-P2b Mmu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr1: 23272274-23272336 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P1b chr1: 23272274-23272336 [+] UCSC Ensembl
Mir-30-P2b chr1: 23291714-23291775 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGGCAUAUCAACGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUCCAACUUCAAGGAGUAAU

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAGGCAUAUCAACGUUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCG CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
UAAUGAGGAACUUCAACCUCC^    C   C            --           GUAAACA 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-30-P1b_5p

mirBase accession

MIMAT0000128

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000128
TargetScanVert: mmu-miR-30a-5p
miRDB: MIMAT0000128

Star sequence

Mmu-Mir-30-P1b_3p*

mirBase accession

MIMAT0000129

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000129
TargetScanVert: mmu-miR-30a-3p
miRDB: MIMAT0000129