Mir-30-P2a

MirGeneDB ID

Cmi-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-30-P1a Cmi-Mir-30-P1b Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cmi-Mir-30-P2b Cmi-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636098.1: 102708-102768 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUAGCGUUUCCAACCGAGUUUCAGACACUGUAAACAUCCUACACUCAGCUUUAACAAGUAAAAGCGGCUGGGAGACGGGUGUUUACUCUAACUGGCUUGGCAAAUCACCGCCUCGGAAG

Get precursor sequence

Structure

        10            20        30        40        50          
GUGUAGCGUUUCCAACC----|   UU   ACACU          UACA       UUAACAA 
                     GAGU  CAG     GUAAACAUCC    CUCAGCU       \
                     UUCG  GUC     CAUUUGUGGG    GGGUCGG       G
GAAGGCUCCGCCACUAAACGG^   --   AAUCU          CAGA       CGAAAAU 
 .       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Star sequence

Cmi-Mir-30-P2a_3p*

mirBase accession

None

Sequence

39- CUGGGAGACGGGUGUUUACUCU -61

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