Mir-30-P2b

MirGeneDB ID

Cmi-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-30-P1a Cmi-Mir-30-P1b Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cmi-Mir-30-P2a Cmi-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cli-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635974.1: 383389-383450 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCCCUCACUCCGCCCCAGGCAAGGUUAGUGUAAACAUCCUACACUCUCAGCUGUGACUAGUGGAAAAGCUGAGAGGAAGGUGUUUGCUCUCACCGGCUUGGAUAACAACACCAACAAAAG

Get precursor sequence

Structure

        10           20        30        40        50        60 
CUUCCCUCACUCCGCCC---|    AA   U  U       U   ACA         GUGACU 
                    CAGGC  GGU AG GUAAACA CCU   CUCUCAGCU      A
                    GUUCG  CCA UC CGUUUGU GGA   GAGAGUCGA      G
GAAAACAACCACAACAAUAG^    G-   C  U       -   AG-         AAAGGU 
120       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-30-P2b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Cmi-Mir-30-P2b_3p*

mirBase accession

None

Sequence

40- CUGAGAGGAAGGUGUUUGCUCU -62

Get sequence