Mir-338-P2-as

MirGeneDB ID

Hsa-Mir-338-P2-as

Family name

MIR-338 (all species)

Seed

CAACAAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-3065

Paralogues

Hsa-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 81125886-81125948 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2 chr17: 81125886-81125944 [-] UCSC Ensembl
Mir-338-P2-as chr17: 81125886-81125948 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCGCCUGAGUCAUCACUCAGCACCAGGAUAUUGUUGGAGAGGACAGCCGUGCGGCGUCUGGGGCUGACG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GGCAGGUCGGGAGGCUG--| A    C            A   A   A     G   CGCCUG 
                   GC GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                   UG CGAC GGAGAGGUUGUU UAG GAC ACGAC UCA      A
GCAGUCGGGGUCUGCGGCG^ C    A            A   -   C     -   CUACUG 
 120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-338-P2-as_5p

mirBase accession

MIMAT0015066

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Proposed targets

microrna.org: MIMAT0015066
TargetScanVert: hsa-miR-3065-5p
TargetMiner: hsa-miR-3065-5p
miRDB: MIMAT0015066

Co-mature sequence

Hsa-Mir-338-P2-as_3p

mirBase accession

MIMAT0015378

Sequence

40- UCAGCACCAGGAUAUUGUUGGAG -63

Get sequence

Proposed targets

microrna.org: MIMAT0015378
TargetScanVert: hsa-miR-3065-3p
TargetMiner: hsa-miR-3065-3p
miRDB: MIMAT0015378