| MirGeneDB ID | Lch-Mir-338-P2 |
|---|---|
| Family name | MIR-338 (all species) |
| Seed | CCAGCAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-338-P1 |
| Orthologues | Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126581.1: 1083401-1083462 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUGUCCACCUGGCCUUGUUCACCUGCUACAACAAUAUCCUGGUGCUGAAUGAGUGGGACUUGGGAGACUCCAGCAUCAGUGAUUUUGUUGCGGAGGGUGAUCACUUGCAUCUGACUUCAGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCUGUCCACCUGGCCUU-- U G UA U -| AAU GGGAC G UCACCU C CAACAA AUC CUGGUGCUG GAGU U C AGUGGG G GUUGUU UAG GACUACGAC CUCA U UGACUUCAGUCUACGUUCA U A GC U U^ --- GAGGG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-338-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAAUAUCCUGGUGCUGAAUGAGU -25
Get sequence
|
| Mature sequence | Lch-Mir-338-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UCCAGCAUCAGUGAUUUUGUUGC -62
Get sequence
|
