MirGeneDB 2.1
MirGeneDB ID

Tgu-Mir-338-P2

Family name MIR-338 (all species)
Seed ACAAUAU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-338-P1  Tgu-Mir-338-P2-as 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 18: 1498115-1498175 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCUGCCCCACCACUGCUCCUCCUGCCCAACAAUAUCCUGGUGCUGAGUGAGUUGCAGACAGAGACUCCAGCAUCAGUGAUUUUGUUGAGGAGGGGGCGCGCUGCCAUCGGGGGCCACC
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Structure
        10          20         30         40         50         
GCUCCUGCCCCACCACU--  U      G  -      U   -        -|   GAGUUGC 
                   GC CCUCCU CC CAACAA AUC CUGGUGCU GAGU       \
                   CG GGGGGA GG GUUGUU UAG GACUACGA CUCA       A
CCACCGGGGGCUACCGUCG  C      -  A      U   U        C^   GAGACAG 
 .       110       100         90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-338-P2_5p
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
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Co-mature sequence

Tgu-Mir-338-P2_3p
mirBase accessionNone
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGA -61
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