| MirGeneDB ID | Esc-Mir-2-o21 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
CACAGCC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Mir-2-o20-v1
Esc-Mir-2-o20-v2
Esc-Mir-2-o22h
Esc-Mir-2-o22i
Esc-Mir-2-o22j
Esc-Mir-2-o22k
Esc-Mir-2-o23-v1
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
|---|
| Orthologues |
Npo-Mir-2-o21
Obi-Mir-2-o21
Ovu-Mir-2-o21
|
|---|
| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o21_pre_SRIE01000454.1:381988-382249: 101-162 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUACACAAUAUCAUCUGCCAUGUCUUUUACUGACCAAGUGGCUGCGACAUGUUAAACAUUCUCUUCAUAUCACAGCCUGCUUGGAUCAGUAUGAGGCUUUCUGGUAUCACAUCCUGAGCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUACACAAUAUCAUCUGCCAU-- U - -| C C GUUAAAC
GUCUU UACUGA CCAAGU GGCUG GA AU A
CGGAG AUGACU GGUUCG CCGAC CU UA U
CCCGAGUCCUACACUAUGGUCUUU U A U^ A A CUUCUCU
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-2-o21_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUGACCAAGUGGCUGCGACAUG -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-2-o21_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCACAGCCUGCUUGGAUCAGUA -62
Get sequence
|
|---|
