MirGeneDB 2.1
MirGeneDB ID

Esc-Mir-2-o24

Family name MIR-2 (all species)
Seed CAUCAAA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Mir-2-o20-v1  Esc-Mir-2-o20-v2  Esc-Mir-2-o21  Esc-Mir-2-o22h  Esc-Mir-2-o22i  Esc-Mir-2-o22j  Esc-Mir-2-o22k  Esc-Mir-2-o23-v1  Esc-Mir-2-o23-v2 
Orthologues Npo-Mir-2-o24  Obi-Mir-2-o24  Ovu-Mir-2-o24 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Protostomia
Genome context
(GCA_004765925.1_miRNA_LOCI)		 Esc-Mir-2-o24_pre_SRIE01000454.1:384633-384896: 101-164 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCGGCCUACAAUGGCUAGCAUCUCCUUUCAUCAAAGUGGCUGUCAUACGUUACCCUUAAUCUCAUUCGUAUCACAGCCUGCUUUGAUGAGAGGAAGCCCUUCACUACAAACCUCCACGAUG
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Structure
        10        20            30        40         50        60 
GACUCGGCCUACAAUGGCUA----| AUC               -      C     UUACCCUU 
                        GC   UCCUUUCAUCAAAGU GGCUGU AUACG        \
                        CG   AGGAGAGUAGUUUCG CCGACA UAUGC        A
GUAGCACCUCCAAACAUCACUUCC^ A--               U      C     UUACUCUA 
  120       110       100          90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Ce Li
Mature sequence

Esc-Mir-2-o24_5p
mirBase accessionNone
Sequence 
0- UCAUCAAAGUGGCUGUCAUACG -22
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Star sequence

Esc-Mir-2-o24_3p*
mirBase accessionNone
Sequence 
41- UAUCACAGCCUGCUUUGAUGAGA -64
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