| MirGeneDB ID | Esc-Mir-2-o22h |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
CACAGCU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Mir-2-o20-v1
Esc-Mir-2-o20-v2
Esc-Mir-2-o21
Esc-Mir-2-o22i
Esc-Mir-2-o22j
Esc-Mir-2-o22k
Esc-Mir-2-o23-v1
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o22h_pre_SRIE01000454.1:382594-382851: 101-158 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUACCCAAGAGAGAAGGCACUGUUGCAACUCAUCAAAUAGCCGUGAUAUGCUGACAAUGACUUAUCACAGCUAGCUUUGAUGAGCUGGGACUCUGCUCUUUGCUGCUUCUGUUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUACCCAAGAGAGAA-- CU G A --| C UGCUGA
GGCA GUU CA CUCAUCAAA UAGC GUGAUA C
UCGU CAG GU GAGUAGUUU AUCG CACUAU A
AUUUUGUCUUCGUCGUUUC CU G C CG^ A UCAGUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-2-o22h_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCAUCAAAUAGCCGUGAUAUG -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-2-o22h_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCACAGCUAGCUUUGAUGAGCU -58
Get sequence
|
|---|
