| MirGeneDB ID | Esc-Mir-2-o22k |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
CACAGCU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Mir-2-o20-v1
Esc-Mir-2-o20-v2
Esc-Mir-2-o21
Esc-Mir-2-o22h
Esc-Mir-2-o22i
Esc-Mir-2-o22j
Esc-Mir-2-o23-v1
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o22k_pre_SRIE01000454.1:383588-383845: 101-158 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUGAAAGGUAUCAUCUGACCACCUCGCAACUCAUCAACUGGUUGUGAUGUGCUAUCUUUGACAUAUCACAGCUAGCUUUGAUGAGCUGUGACUUGGGCAUCAUCAACAUGCUGGAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGAAAGGUAUCAUCUGA-- CC A --| GCUAU
CCA UCGCA CUCAUCAA CUGGUUGUGAUGU C
GGU AGUGU GAGUAGUU GAUCGACACUAUA U
UAAGGUCGUACAACUACUACG UC C UC^ CAGUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-2-o22k_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCAUCAACUGGUUGUGAUGUG -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-2-o22k_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCACAGCUAGCUUUGAUGAGCU -58
Get sequence
|
|---|
