| MirGeneDB ID | Npo-Mir-2-o21 |
|---|---|
| Family name | MIR-2 (all species) |
| Seed | AUCACAG |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-2-o20 Npo-Mir-2-o22f Npo-Mir-2-o22g Npo-Mir-2-o23 Npo-Mir-2-o24 |
| Orthologues | Esc-Mir-2-o21 Obi-Mir-2-o21 Ovu-Mir-2-o21 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409697-409758 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGGUGGGGGGUUGACAAGGCUGUGCGGUGCUGACCAGGUGGUUGUGAUGUGCUGAGAUCAAUGUUCAUAUCACAGCCUGCUUGGAUCAGUACAGCGCUGGCUGCUGCUGCUGCUGGGUCAAGet precursor sequence |
| Structure | 10 20 30 40 50
GGGGUGGGGGGUUGACAA- - G - -| CUGAGA
GGCU GUGC GUGCUGA CCAGGU GGUUGUGAUGUG U
UCGG CGCG CAUGACU GGUUCG CCGACACUAUAC C
AACUGGGUCGUCGUCGUCG U A A U^ UUGUAA
120 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-2-o21_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CUGACCAGGUGGUUGUGAUGUG -22
Get sequence
|
| Mature sequence | Npo-Mir-2-o21_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UAUCACAGCCUGCUUGGAUCAGUA -62
Get sequence
|
